Peptide Comparison
Magainin-2vsGramicidin
Amphipathic 23-amino-acid antimicrobial peptide from Xenopus laevis skin — the founding member of the magainin family discovered by Michael Zasloff at NIH in 1987, operating through the toroidal pore membrane disruption model with broad-spectrum activity against Gram-positive and Gram-negative bacteria, whose synthetic derivative Pexiganan (MSI-78) advanced to Phase III clinical trials for diabetic foot ulcers
Historic 15-amino-acid linear pentadecapeptide antibiotic with alternating D- and L-amino acids — the first commercially produced antibiotic discovered by René Dubos in 1939, forming monovalent cation-selective transmembrane channels in bacterial membranes, FDA-approved as a topical/ophthalmic antimicrobial component of Neosporin and related preparations
At a Glance
Quick
comparison
Dose Range
Magainin-2
1–5 mg
Gramicidin
0.025–0.25 mg/mL
Frequency
Magainin-2
Multiple times daily
Gramicidin
Multiple times daily
Administration
Magainin-2
Topical application (primary clinical route)
Gramicidin
Topical application (primary clinical route)
Cycle Length
Magainin-2
4-6 weeks
Gramicidin
8-12 weeks
Onset Speed
Magainin-2
Rapid (hours to days)
Gramicidin
Rapid (hours to days)
Evidence Level
Magainin-2
Moderate human trials (Phase 1-2)
Gramicidin
Strong human trials (Phase 3 or FDA approved)
Efficacy
Benefit
ratings
Healing
Immune
Energy
Technical Data
Compound
specifications
Magainin-2
Molecular Formula
C114H180N30O29S
Molecular Weight
2,466.9 g/mol (magainin-2); Pexiganan (MSI-78): ~2,500 Da
Half-Life
Plasma half-life: minutes (rapid proteolytic degradation by serum proteases); local tissue persistence in wound environment: hours at therapeutic concentrations
Bioavailability
Topical bioavailability: local tissue concentrations achieve bactericidal levels with 1-2% cream formulation; systemic bioavailability minimal — rapidly degraded by tissue proteases if absorbed; poor oral bioavailability
CAS Number
108433-95-0
Gramicidin
Molecular Formula
C₉₉H₁₄₀N₂₀O₁₇ (gramicidin A)
Molecular Weight
1,882.3 Da (gramicidin A); Gramicidin D mixture: ~1,880-1,900 Da average
Half-Life
Local tissue persistence: hours to days at topical application sites (protease-resistant D-amino acid structure); systemic half-life: not applicable (hemolytic — never administered systemically); single channel lifetime: ~1 second (open/close kinetics in electrophysiology)
Bioavailability
Topical: local tissue concentrations at application site; systemic absorption negligible through intact skin and eye; oral bioavailability: not applicable (not used orally for systemic effect; would cause GI hemolysis); intrinsically resistant to proteases due to D-amino acid content
CAS Number
11029-61-1 (gramicidin A); 1405-97-6 (gramicidin D mixture)
Protocols
Dosing
tiers
Magainin-2
Gramicidin
Applications
Best
suited for
Magainin-2
Research into topical antimicrobial peptides for diabetic foot ulcer management
Magainin-2 is particularly well-suited for individuals focused on research into topical antimicrobial peptides for diabetic foot ulcer management. Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Understanding the toroidal pore model of antimicrobial peptide membrane disruption
Magainin-2 is particularly well-suited for individuals focused on understanding the toroidal pore model of antimicrobial peptide membrane disruption. Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Development of resistance-proof antimicrobial agents targeting membrane architecture
Magainin-2 is particularly well-suited for individuals focused on development of resistance-proof antimicrobial agents targeting membrane architecture. Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Investigation of selective anticancer activity mediated by membrane phospholipid asymmetry
Magainin-2 is particularly well-suited for individuals focused on investigation of selective anticancer activity mediated by membrane phospholipid asymmetry. Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Gramicidin
Topical treatment of bacterial conjunctivitis and external eye infections (FDA-approved)
Gramicidin is particularly well-suited for individuals focused on topical treatment of bacterial conjunctivitis and external eye infections (fda-approved). Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Prophylaxis and treatment of superficial skin infections, minor cuts, scrapes, and burns (OTC topical preparations)
Gramicidin is particularly well-suited for individuals focused on prophylaxis and treatment of superficial skin infections, minor cuts, scrapes, and burns (otc topical preparations). Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Research into ion channel biophysics, single-channel electrophysiology, and membrane transport mechanisms
Gramicidin is particularly well-suited for individuals focused on research into ion channel biophysics, single-channel electrophysiology, and membrane transport mechanisms. Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Combination topical antimicrobial therapy providing Gram-positive coverage alongside polymyxin B for Gram-negatives
Gramicidin is particularly well-suited for individuals focused on combination topical antimicrobial therapy providing gram-positive coverage alongside polymyxin b for gram-negatives. Research and clinical experience suggest meaningful benefits in this area when used as part of a comprehensive treatment approach.
Safety Profile
Side
effects
Magainin-2
Common
- Application site burning/stinging
- Local erythema
- Mild pruritus
- Increased wound exudate
Uncommon
- Contact sensitization
Serious
- No serious systemic adverse effects documented
Gramicidin
Common
- Ophthalmic stinging/burning
- Local skin irritation
- Temporary blurred vision
- Contact sensitization
Uncommon
- Superinfection
Serious
- Hemolytic toxicity with systemic absorption
Research Status
Safety
& evidence
Magainin-2
Evidence Level
Moderate human trials (Phase 1-2)
FDA Status
Research compound
Safety Overview
Magainin-2 demonstrates favorable safety in topical antimicrobial wound care studies with minimal systemic absorption through intact skin. Local tissue irritation minimal at therapeutic concentrations (0.1-1% w/w); hemolytic activity negligible at concentrations <10 μM. No serious adverse events in Phase II wound healing trials. Peptide stability dependent on formulation pH; activity preserved at physiologic pH. Resistance development slower than traditional antibiotics.
Contraindications
- xKnown hypersensitivity to magainin peptides or amphibian-derived proteins
- xPregnancy and breastfeeding — insufficient safety data for magainin-derived therapeutics
- xDeep tissue infections requiring systemic antimicrobial therapy — topical magainin has limited tissue penetration depth
- xSevere peripheral vascular disease with non-viable tissue — antimicrobial peptides require viable tissue interface for effective action
Gramicidin
Evidence Level
Strong human trials (Phase 3 or FDA approved)
FDA Status
FDA approved for this use
Safety Overview
Gramicidin is a cyclic peptide antibiotic derived from Bacillus brevis with a 70+ year track record of topical safety. It functions as a pore-former in bacterial membranes and shows minimal systemic absorption when applied to intact skin or mucous membranes, making it extremely low-toxicity for localized use. The primary safety concern is sensitization reactions in 1-5% of users with prolonged exposure, not organ toxicity. Gramicidin is FDA-approved for topical antibacterial applications and generally well-tolerated across age groups.
Contraindications
- xKnown hypersensitivity to gramicidin or any component of topical/ophthalmic formulations
- xSystemic administration by any route — gramicidin is hemolytic and toxic to red blood cells; strictly topical/ophthalmic use only
- xDeep puncture wounds or severe burns requiring systemic antimicrobial coverage
- xProlonged use on large open wounds — even topical gramicidin may cause hemolysis if absorbed systemically through extensive denuded skin
Decision Guide
Which is
right for you?
Choose Magainin-2 if...
- Research into topical antimicrobial peptides for diabetic foot ulcer management
- Understanding the toroidal pore model of antimicrobial peptide membrane disruption
- Development of resistance-proof antimicrobial agents targeting membrane architecture
- Investigation of selective anticancer activity mediated by membrane phospholipid asymmetry
Choose Gramicidin if...
- Topical treatment of bacterial conjunctivitis and external eye infections (FDA-approved)
- Prophylaxis and treatment of superficial skin infections, minor cuts, scrapes, and burns (OTC topical preparations)
- Research into ion channel biophysics, single-channel electrophysiology, and membrane transport mechanisms
- Combination topical antimicrobial therapy providing Gram-positive coverage alongside polymyxin B for Gram-negatives